Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12710, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 21 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link | PF12710 |
---|---|
Description | haloacid dehalogenase-like hydrolase |
Occurence in the database
PF12710 is associated with 21 different proteins (see tab "Protein list" and "Profile") |
The 21 proteins are classified into 4 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_2553 | FBDBKF_02565 | 211415 | 212245 | -1 | HAD phosphoserine phosphatase-like hydrolase, family IB | Morganella morganii S1 | |
1 | group_2297 | FBDBKF_17645 | 25915 | 26589 | -1 | serB | Phosphoserine phosphatase | Morganella morganii S1 |
2 | group_2332 | FBDBKF_18290 | 22824 | 23579 | -1 | serB | Phosphoserine phosphatase | Morganella morganii S1 |
3 | group_2553 | EHELCC_03035 | 599235 | 600065 | -1 | HAD phosphoserine phosphatase-like hydrolase, family IB | Morganella morganii S2 | |
4 | group_2297 | EHELCC_18130 | 25291 | 25965 | -1 | serB | Phosphoserine phosphatase | Morganella morganii S2 |
5 | group_2332 | EHELCC_18325 | 22697 | 23452 | -1 | serB | Phosphoserine phosphatase | Morganella morganii S2 |
6 | group_2553 | NLDBIP_00425 | 80071 | 80901 | 1 | HAD phosphoserine phosphatase-like hydrolase, family IB | Morganella morganii S4 | |
7 | group_2297 | NLDBIP_18020 | 12772 | 13446 | 1 | serB | Phosphoserine phosphatase | Morganella morganii S4 |
8 | group_2332 | NLDBIP_18250 | 22898 | 23653 | -1 | serB | Phosphoserine phosphatase | Morganella morganii S4 |
9 | group_2553 | LHKJJB_01610 | 311784 | 312614 | -1 | HAD phosphoserine phosphatase-like hydrolase, family IB | Morganella morganii S3 | |
10 | group_2297 | LHKJJB_18215 | 12772 | 13446 | 1 | serB | Phosphoserine phosphatase | Morganella morganii S3 |
11 | group_2332 | LHKJJB_18445 | 22736 | 23491 | -1 | serB | Phosphoserine phosphatase | Morganella morganii S3 |
12 | group_2553 | HKOGLL_01650 | 317295 | 318125 | -1 | HAD phosphoserine phosphatase-like hydrolase, family IB | Morganella morganii S5 | |
13 | group_2297 | HKOGLL_17985 | 25291 | 25965 | -1 | serB | Phosphoserine phosphatase | Morganella morganii S5 |
14 | group_2332 | HKOGLL_18180 | 22714 | 23469 | -1 | serB | Phosphoserine phosphatase | Morganella morganii S5 |
15 | group_2332 | F4V73_RS01805 | 396480 | 397142 | -1 | HAD family hydrolase | Morganella psychrotolerans | |
16 | group_2553 | F4V73_RS04995 | 1064150 | 1064980 | -1 | HAD family hydrolase | Morganella psychrotolerans | |
17 | group_2297 | F4V73_RS15025 | 244575 | 245243 | -1 | HAD family hydrolase | Morganella psychrotolerans | |
18 | group_1153 | F4V73_RS15340 | 51537 | 52514 | 1 | serB | phosphoserine phosphatase | Morganella psychrotolerans |
19 | group_2332 | PMI_RS11785 | 2606971 | 2607651 | 1 | HAD family hydrolase | Proteus mirabilis HI4320 | |
20 | group_2297 | PMI_RS13710 | 3045740 | 3046420 | 1 | HAD family hydrolase | Proteus mirabilis HI4320 |