PF12486


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12486, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12486
Description Type VI secretion system, EvfB, or VasL

Occurence in the database

PF12486 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_148 FBDBKF_01360 267489 268844 1 impA ImpA N-terminal domain-containing protein Morganella morganii S1
1 group_148 EHELCC_00185 40024 41379 -1 impA ImpA N-terminal domain-containing protein Morganella morganii S2
2 group_148 NLDBIP_03275 638757 640112 1 impA ImpA N-terminal domain-containing protein Morganella morganii S4
3 group_148 LHKJJB_04790 245998 247353 1 impA ImpA N-terminal domain-containing protein Morganella morganii S3
4 group_148 HKOGLL_02255 40229 41584 -1 impA ImpA N-terminal domain-containing protein Morganella morganii S5
5 group_148 F4V73_RS02310 487204 488550 -1 VasL domain-containing protein Morganella psychrotolerans
6 group_148 F4V73_RS16725 167536 168903 -1 VasL domain-containing protein Morganella psychrotolerans
7 group_148 PMI_RS03615 810082 811425 -1 VasL domain-containing protein Proteus mirabilis HI4320