PF12399


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12399, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12399
Description Branched-chain amino acid ATP-binding cassette transporter

Occurence in the database

PF12399 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_734 FBDBKF_03245 49901 50626 1 lptB LPS export ABC transporter ATP-binding protein Morganella morganii S1
1 group_2605 FBDBKF_03465 98438 99208 -1 livG high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG Morganella morganii S1
2 group_2605 EHELCC_07070 147895 148665 1 livG high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG Morganella morganii S2
3 group_734 EHELCC_07290 196477 197202 -1 lptB LPS export ABC transporter ATP-binding protein Morganella morganii S2
4 group_2605 NLDBIP_07395 147768 148538 1 livG high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG Morganella morganii S4
5 group_734 NLDBIP_07615 196350 197075 -1 lptB LPS export ABC transporter ATP-binding protein Morganella morganii S4
6 group_2605 LHKJJB_06930 111514 112284 1 livG high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG Morganella morganii S3
7 group_734 LHKJJB_07150 160096 160821 -1 lptB LPS export ABC transporter ATP-binding protein Morganella morganii S3
8 group_734 HKOGLL_03780 72566 73291 1 lptB LPS export ABC transporter ATP-binding protein Morganella morganii S5
9 group_2605 HKOGLL_04000 121103 121873 -1 livG high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG Morganella morganii S5
10 group_2605 F4V73_RS11430 429457 430227 1 livG high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG Morganella psychrotolerans
11 group_734 F4V73_RS11675 486020 486745 -1 lptB LPS export ABC transporter ATP-binding protein Morganella psychrotolerans
12 group_734 PMI_RS18155 3986821 3987546 -1 lptB LPS export ABC transporter ATP-binding protein Proteus mirabilis HI4320