PF09600


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF09600, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF09600
Description Cyd operon protein YbgE (Cyd_oper_YbgE)

Occurence in the database

PF09600 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1513 FBDBKF_09785 51340 51624 -1 ybgE cyd operon protein YbgE Morganella morganii S1
1 group_1513 EHELCC_04585 243305 243589 -1 ybgE cyd operon protein YbgE Morganella morganii S2
2 group_1513 NLDBIP_04585 243101 243385 -1 ybgE cyd operon protein YbgE Morganella morganii S4
3 group_1513 LHKJJB_14045 91993 92277 1 ybgE cyd operon protein YbgE Morganella morganii S3
4 group_1513 HKOGLL_12490 52121 52405 -1 ybgE cyd operon protein YbgE Morganella morganii S5
5 group_1513 F4V73_RS00560 120996 121280 1 ybgE cyd operon protein YbgE Morganella psychrotolerans
6 group_1513 PMI_RS02830 624365 624649 1 ybgE cyd operon protein YbgE Proteus mirabilis HI4320