Homologs in group_1513

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09785 FBDBKF_09785 100.0 Morganella morganii S1 ybgE cyd operon protein YbgE
EHELCC_04585 EHELCC_04585 100.0 Morganella morganii S2 ybgE cyd operon protein YbgE
NLDBIP_04585 NLDBIP_04585 100.0 Morganella morganii S4 ybgE cyd operon protein YbgE
LHKJJB_14045 LHKJJB_14045 100.0 Morganella morganii S3 ybgE cyd operon protein YbgE
F4V73_RS00560 F4V73_RS00560 88.3 Morganella psychrotolerans ybgE cyd operon protein YbgE
PMI_RS02830 PMI_RS02830 71.3 Proteus mirabilis HI4320 ybgE cyd operon protein YbgE

Distribution of the homologs in the orthogroup group_1513

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1513

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AAV3 4.26e-29 103 55 0 88 4 ybgE Uncharacterized protein YbgE Shigella flexneri
P0AAV0 4.26e-29 103 55 0 88 4 ybgE Uncharacterized protein YbgE Escherichia coli (strain K12)
P0AAV1 4.26e-29 103 55 0 88 4 ybgE Uncharacterized protein YbgE Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AAV2 4.26e-29 103 55 0 88 4 ybgE Uncharacterized protein YbgE Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_12490
Feature type CDS
Gene ybgE
Product cyd operon protein YbgE
Location 52121 - 52405 (strand: -1)
Length 285 (nucleotides) / 94 (amino acids)

Contig

Accession ZDB_690
Length 144397 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1513
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3790 Function unknown (S) S Predicted membrane protein, encoded in cydAB operon

Protein Sequence

MLDKSYQLLDKGPLRALVLIMALGLALSVIWDPSRFAANTSSLQIWQGLLMIWAVCSGAIFGLAFRPKRAIWKILFHPLPAVVILGYGLYHFFS

Flanking regions ( +/- flanking 50bp)

CTGGCTATTGAGCACCACGAAGATAAAGCCGCTTCAGGCGAGTAAGACGGATGCTGGATAAGTCTTACCAACTACTGGATAAGGGTCCCTTACGGGCCCTTGTCCTGATAATGGCGTTGGGGCTGGCATTGAGTGTGATCTGGGATCCGTCGCGTTTTGCGGCAAACACCAGTTCATTACAGATCTGGCAGGGACTGCTGATGATCTGGGCTGTATGCAGCGGCGCAATTTTCGGTCTGGCATTCCGGCCGAAGCGCGCAATCTGGAAGATTCTGTTCCATCCGCTTCCGGCGGTGGTGATTCTGGGTTACGGCCTTTATCATTTTTTCAGCTGATATAAACGTTTATGACTAAAAAGCCGTTCATCTGAACGGCTTTTTTTCTT