Homologs in group_1513

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09785 FBDBKF_09785 71.3 Morganella morganii S1 ybgE cyd operon protein YbgE
EHELCC_04585 EHELCC_04585 71.3 Morganella morganii S2 ybgE cyd operon protein YbgE
NLDBIP_04585 NLDBIP_04585 71.3 Morganella morganii S4 ybgE cyd operon protein YbgE
LHKJJB_14045 LHKJJB_14045 71.3 Morganella morganii S3 ybgE cyd operon protein YbgE
HKOGLL_12490 HKOGLL_12490 71.3 Morganella morganii S5 ybgE cyd operon protein YbgE
F4V73_RS00560 F4V73_RS00560 73.4 Morganella psychrotolerans ybgE cyd operon protein YbgE

Distribution of the homologs in the orthogroup group_1513

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1513

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AAV3 2.91e-30 105 53 0 89 4 ybgE Uncharacterized protein YbgE Shigella flexneri
P0AAV0 2.91e-30 105 53 0 89 4 ybgE Uncharacterized protein YbgE Escherichia coli (strain K12)
P0AAV1 2.91e-30 105 53 0 89 4 ybgE Uncharacterized protein YbgE Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AAV2 2.91e-30 105 53 0 89 4 ybgE Uncharacterized protein YbgE Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS02830
Feature type CDS
Gene ybgE
Product cyd operon protein YbgE
Location 624365 - 624649 (strand: 1)
Length 285 (nucleotides) / 94 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1513
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3790 Function unknown (S) S Predicted membrane protein, encoded in cydAB operon

Protein Sequence

MLDKSYQLLNKGPIRALVLIMALAMAFCVMWDPSRFAANTSSLAIWQGILLIWAVCAGAVFGLAYRPKHVVAQYLLHPIPAIIILVVGLYYFFF

Flanking regions ( +/- flanking 50bp)

CTGGCTTATGAGCACGCTGAAGCGAAAAAAACTTCAGAAAGTGAAGAATAATGTTGGATAAAAGTTACCAACTACTTAACAAGGGCCCAATTAGGGCTCTTGTTTTAATCATGGCTCTAGCAATGGCATTTTGTGTTATGTGGGATCCGAGTCGATTCGCGGCTAATACAAGCTCATTAGCGATTTGGCAAGGAATATTACTGATTTGGGCTGTATGTGCAGGGGCAGTTTTTGGCTTAGCCTATCGTCCTAAACATGTTGTAGCGCAATATCTATTACATCCCATTCCCGCCATTATTATTTTAGTTGTAGGGCTATATTATTTCTTCTTCTAATCAAAATGCCTTATTTTAACCTCTAGTAAGTGGCGTAAAATAAGGCATTC