PF09334


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF09334, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF09334
Description tRNA synthetases class I (M)

Occurence in the database

PF09334 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1184 FBDBKF_06825 27830 29863 -1 metG methionine--tRNA ligase Morganella morganii S1
1 group_1549 FBDBKF_10035 99878 102460 1 leuS leucine--tRNA ligase Morganella morganii S1
2 group_1184 EHELCC_04145 156323 158356 1 metG methionine--tRNA ligase Morganella morganii S2
3 group_1549 EHELCC_04835 291843 294425 1 leuS leucine--tRNA ligase Morganella morganii S2
4 group_1184 NLDBIP_04145 156119 158152 1 metG methionine--tRNA ligase Morganella morganii S4
5 group_1549 NLDBIP_04835 291639 294221 1 leuS leucine--tRNA ligase Morganella morganii S4
6 group_1184 LHKJJB_09975 156233 158266 1 metG methionine--tRNA ligase Morganella morganii S3
7 group_1549 LHKJJB_13795 41157 43739 -1 leuS leucine--tRNA ligase Morganella morganii S3
8 group_1184 HKOGLL_09000 32786 34819 -1 metG methionine--tRNA ligase Morganella morganii S5
9 group_1549 HKOGLL_12740 100659 103241 1 leuS leucine--tRNA ligase Morganella morganii S5
10 group_1549 F4V73_RS00300 69229 71811 -1 leuS leucine--tRNA ligase Morganella psychrotolerans
11 group_1184 F4V73_RS00975 206387 208420 -1 metG methionine--tRNA ligase Morganella psychrotolerans
12 group_1549 PMI_RS02135 499556 502138 -1 leuS leucine--tRNA ligase Proteus mirabilis HI4320
13 group_1184 PMI_RS03185 702245 704272 -1 metG methionine--tRNA ligase Proteus mirabilis HI4320