PF08411


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF08411, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF08411
Description Exonuclease C-terminal

Occurence in the database

PF08411 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1970 FBDBKF_14770 51745 53163 1 sbcB exodeoxyribonuclease I Morganella morganii S1
1 group_1970 EHELCC_15575 81821 83239 1 sbcB exodeoxyribonuclease I Morganella morganii S2
2 group_1970 NLDBIP_16105 81821 83239 1 sbcB exodeoxyribonuclease I Morganella morganii S4
3 group_1970 LHKJJB_15735 33447 34865 -1 sbcB exodeoxyribonuclease I Morganella morganii S3
4 group_1970 HKOGLL_14855 32659 34077 -1 sbcB exodeoxyribonuclease I Morganella morganii S5
5 group_1970 F4V73_RS07565 1580621 1582039 1 sbcB exodeoxyribonuclease I Morganella psychrotolerans
6 group_1970 PMI_RS04165 937301 938731 -1 sbcB exodeoxyribonuclease I Proteus mirabilis HI4320