PF08272


Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF08272
Protein list: lists the 7 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.

Description

External link PF08272
Description Topoisomerase I zinc-ribbon-like

Occurence in the database

PF08272 is associated with 7 different proteins
The 7 proteins are classified into 1 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1007 FBDBKF_05115 29121 31709 -1 topA type I DNA topoisomerase Morganella morganii S1
1 group_1007 EHELCC_12475 149785 152373 1 topA type I DNA topoisomerase Morganella morganii S2
2 group_1007 NLDBIP_12815 149740 152328 1 topA type I DNA topoisomerase Morganella morganii S4
3 group_1007 LHKJJB_12675 149785 152373 1 topA type I DNA topoisomerase Morganella morganii S3
4 group_1007 HKOGLL_11290 149785 152373 1 topA type I DNA topoisomerase Morganella morganii S5
5 group_1007 F4V73_RS05570 1184169 1186769 -1 topA type I DNA topoisomerase Morganella psychrotolerans
6 group_1007 PMI_RS06435 1411151 1413748 -1 topA type I DNA topoisomerase Proteus mirabilis HI4320