PF08239


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF08239, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF08239
Description Bacterial SH3 domain

Occurence in the database

PF08239 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1119 FBDBKF_06380 111445 112068 1 ygiM TIGR04211 family SH3 domain-containing protein Morganella morganii S1
1 group_1119 EHELCC_09425 112017 112640 1 ygiM TIGR04211 family SH3 domain-containing protein Morganella morganii S2
2 group_1119 NLDBIP_09805 112017 112640 1 ygiM TIGR04211 family SH3 domain-containing protein Morganella morganii S4
3 group_1119 LHKJJB_07950 104598 105221 -1 ygiM TIGR04211 family SH3 domain-containing protein Morganella morganii S3
4 group_1119 HKOGLL_07500 104598 105221 -1 ygiM TIGR04211 family SH3 domain-containing protein Morganella morganii S5
5 group_1119 F4V73_RS15545 101985 102602 -1 TIGR04211 family SH3 domain-containing protein Morganella psychrotolerans
6 group_1119 PMI_RS11675 2581611 2582231 1 TIGR04211 family SH3 domain-containing protein Proteus mirabilis HI4320