Homologs in group_1119

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06380 FBDBKF_06380 100.0 Morganella morganii S1 ygiM TIGR04211 family SH3 domain-containing protein
EHELCC_09425 EHELCC_09425 100.0 Morganella morganii S2 ygiM TIGR04211 family SH3 domain-containing protein
LHKJJB_07950 LHKJJB_07950 100.0 Morganella morganii S3 ygiM TIGR04211 family SH3 domain-containing protein
HKOGLL_07500 HKOGLL_07500 100.0 Morganella morganii S5 ygiM TIGR04211 family SH3 domain-containing protein
F4V73_RS15545 F4V73_RS15545 91.2 Morganella psychrotolerans - TIGR04211 family SH3 domain-containing protein
PMI_RS11675 PMI_RS11675 67.7 Proteus mirabilis HI4320 - TIGR04211 family SH3 domain-containing protein

Distribution of the homologs in the orthogroup group_1119

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1119

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ADU1 3.43e-77 233 58 1 206 3 ygiM Uncharacterized protein YgiM Shigella flexneri
P0ADT8 3.43e-77 233 58 1 206 3 ygiM Uncharacterized protein YgiM Escherichia coli (strain K12)
P0ADT9 3.43e-77 233 58 1 206 3 ygiM Uncharacterized protein YgiM Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ADU0 3.43e-77 233 58 1 206 3 ygiM Uncharacterized protein YgiM Escherichia coli O157:H7
P44272 5.85e-37 130 38 1 181 3 HI_1605 Uncharacterized protein HI_1605 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_09805
Feature type CDS
Gene ygiM
Product TIGR04211 family SH3 domain-containing protein
Location 112017 - 112640 (strand: 1)
Length 624 (nucleotides) / 207 (amino acids)

Contig

Accession ZDB_524
Length 215957 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1119
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF08239 Bacterial SH3 domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3103 General function prediction only (R) R Uncharacterized conserved protein YgiM, contains N-terminal SH3 domain, DUF1202 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07184 SH3 domain protein - -

Protein Sequence

MTMKKLALLPLLFAATVSITAHAEEIRYVSDDLSTYVHSGPSNRYRIAGSLNSGEKVTVLDVNNESGFVRVRDSKNRDVWLPKELLSTTPSLKERVPAMEEEIKTLRDKLANIDGTWNDKTADMQNRVAASDDIINNLKKENDSLRNQVVVAKKKLDAISVQLDDKQRDIILQWFMYGGGVAGAGLLLGLLLPHMIPRRKKKDRWMN

Flanking regions ( +/- flanking 50bp)

CACACTTAACTCATTAGTATGCTATTCATAACCAACGATTGATAAAGCTTATGACGATGAAAAAACTCGCCTTACTCCCTTTGCTGTTTGCAGCAACCGTCAGCATTACCGCCCATGCTGAAGAAATCCGTTATGTCTCTGATGACCTCTCCACCTATGTTCACAGCGGTCCGAGCAACCGCTACCGCATTGCCGGCTCACTTAATTCCGGAGAAAAAGTCACCGTTCTTGATGTGAATAATGAGAGCGGTTTTGTCCGTGTCCGTGACAGCAAAAACCGCGATGTCTGGTTACCGAAAGAGCTGCTGAGCACCACACCAAGCCTGAAAGAACGCGTTCCGGCCATGGAAGAAGAAATTAAAACACTGCGCGACAAACTCGCCAATATCGACGGCACCTGGAACGACAAAACGGCGGACATGCAAAACCGTGTGGCCGCCAGTGATGATATCATTAATAACCTGAAAAAAGAGAATGACAGCCTGCGTAATCAGGTTGTGGTCGCAAAGAAAAAACTGGATGCCATCAGTGTGCAGTTGGATGACAAACAGCGCGATATTATCCTGCAATGGTTTATGTACGGCGGCGGCGTAGCCGGTGCCGGTCTGCTGCTGGGTCTGCTGCTCCCGCATATGATCCCGCGCCGCAAGAAAAAAGATCGCTGGATGAACTGAGCCTCACAGTAACCGCAGTACGGAGAAACGCGTGGATATTTATCTGGTCG