PF08032


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF08032, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF08032
Description RNA 2'-O ribose methyltransferase substrate binding

Occurence in the database

PF08032 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1372 FBDBKF_08490 80252 80986 1 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB Morganella morganii S1
1 group_1572 FBDBKF_10195 132410 133498 -1 spoU tRNA/rRNA methyltransferase Morganella morganii S1
2 group_1572 EHELCC_04995 324375 325463 -1 spoU tRNA/rRNA methyltransferase Morganella morganii S2
3 group_1372 EHELCC_13035 82739 83473 -1 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB Morganella morganii S2
4 group_1572 NLDBIP_04995 324171 325259 -1 spoU tRNA/rRNA methyltransferase Morganella morganii S4
5 group_1372 NLDBIP_13375 82739 83473 -1 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB Morganella morganii S4
6 group_1372 LHKJJB_13180 78970 79704 1 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB Morganella morganii S3
7 group_1572 LHKJJB_13635 10119 11207 1 spoU tRNA/rRNA methyltransferase Morganella morganii S3
8 group_1372 HKOGLL_11850 82739 83473 -1 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB Morganella morganii S5
9 group_1572 HKOGLL_12900 133191 134279 -1 spoU tRNA/rRNA methyltransferase Morganella morganii S5
10 group_1572 F4V73_RS00135 36468 37547 1 tRNA/rRNA methyltransferase Morganella psychrotolerans
11 group_1372 F4V73_RS09710 46443 47177 1 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB Morganella psychrotolerans
12 group_1572 PMI_RS01975 465490 466593 1 tRNA/rRNA methyltransferase Proteus mirabilis HI4320
13 group_1372 PMI_RS16785 3701905 3702636 1 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB Proteus mirabilis HI4320