PF07963


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF07963, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF07963
Description Prokaryotic N-terminal methylation motif

Occurence in the database

PF07963 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_842 FBDBKF_04255 39424 39843 1 ppdD prepilin peptidase-dependent pilin Morganella morganii S1
1 group_2701 FBDBKF_06170 63479 63811 -1 pilV Type IV pilus assembly protein PilV Morganella morganii S1
2 group_842 EHELCC_05545 98881 99300 1 ppdD prepilin peptidase-dependent pilin Morganella morganii S2
3 group_2701 EHELCC_09215 64051 64383 -1 pilV Type IV pilus assembly protein PilV Morganella morganii S2
4 group_842 NLDBIP_05865 139946 140365 1 ppdD prepilin peptidase-dependent pilin Morganella morganii S4
5 group_2701 NLDBIP_09595 64051 64383 -1 pilV Type IV pilus assembly protein PilV Morganella morganii S4
6 group_842 LHKJJB_02745 117470 117889 1 ppdD prepilin peptidase-dependent pilin Morganella morganii S3
7 group_2701 LHKJJB_08160 152855 153187 1 pilV Type IV pilus assembly protein PilV Morganella morganii S3
8 group_842 HKOGLL_06220 39334 39753 1 ppdD prepilin peptidase-dependent pilin Morganella morganii S5
9 group_2701 HKOGLL_07710 152855 153187 1 pilV Type IV pilus assembly protein PilV Morganella morganii S5
10 group_842 F4V73_RS08700 1800493 1800912 1 ppdD prepilin peptidase-dependent pilin Morganella psychrotolerans
11 group_2701 F4V73_RS15745 150341 150709 1 prepilin-type N-terminal cleavage/methylation domain-containing protein Morganella psychrotolerans
12 group_842 PMI_RS10100 2207345 2207788 1 ppdD prepilin peptidase-dependent pilin Proteus mirabilis HI4320
13 group_1088 PMI_RS11450 2523069 2523548 -1 prepilin-type N-terminal cleavage/methylation domain-containing protein Proteus mirabilis HI4320