PF07885


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF07885, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF07885
Description Ion channel

Occurence in the database

PF07885 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1156 FBDBKF_06625 165942 167108 -1 trkA Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain Morganella morganii S1
1 group_1156 EHELCC_09670 166514 167680 -1 trkA Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain Morganella morganii S2
2 group_1156 NLDBIP_10050 166514 167680 -1 trkA Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain Morganella morganii S4
3 group_1156 LHKJJB_07705 49558 50724 1 trkA Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain Morganella morganii S3
4 group_1156 HKOGLL_07255 49558 50724 1 trkA Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain Morganella morganii S5
5 group_1156 F4V73_RS15310 47216 48382 1 NAD-binding protein Morganella psychrotolerans
6 group_1156 PMI_RS10430 2291451 2292563 -1 NAD-binding protein Proteus mirabilis HI4320