PF07683


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF07683, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF07683
Description Cobalamin synthesis protein cobW C-terminal domain

Occurence in the database

PF07683 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1290 FBDBKF_07850 97328 98287 1 yjiA GTPase Morganella morganii S1
1 group_1290 EHELCC_13680 71522 72481 1 yjiA GTPase Morganella morganii S2
2 group_1290 NLDBIP_14125 92397 93356 1 yjiA GTPase Morganella morganii S4
3 group_1290 LHKJJB_08725 66393 67352 -1 yjiA GTPase Morganella morganii S3
4 group_1290 HKOGLL_08275 66393 67352 -1 yjiA GTPase Morganella morganii S5
5 group_1290 F4V73_RS13190 257321 258280 -1 yjiA GTPase Morganella psychrotolerans
6 group_1290 PMI_RS00695 178444 179421 1 yjiA GTPase Proteus mirabilis HI4320