PF07549


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF07549, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF07549
Description SecD/SecF GG Motif

Occurence in the database

PF07549 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2258 FBDBKF_17390 8363 9331 -1 secF Preprotein translocase subunit SecF Morganella morganii S1
1 group_2259 FBDBKF_17395 9342 11156 -1 secD Preprotein translocase subunit SecD Morganella morganii S1
2 group_2258 EHELCC_17285 8363 9331 -1 secF Preprotein translocase subunit SecF Morganella morganii S2
3 group_2259 EHELCC_17290 9342 11156 -1 secD Preprotein translocase subunit SecD Morganella morganii S2
4 group_2259 NLDBIP_17905 31640 33454 1 secD Preprotein translocase subunit SecD Morganella morganii S4
5 group_2258 NLDBIP_17910 33465 34433 1 secF Preprotein translocase subunit SecF Morganella morganii S4
6 group_2259 LHKJJB_17825 31638 33452 1 secD Preprotein translocase subunit SecD Morganella morganii S3
7 group_2258 LHKJJB_17830 33463 34431 1 secF Preprotein translocase subunit SecF Morganella morganii S3
8 group_2259 HKOGLL_17835 31638 33452 1 secD Preprotein translocase subunit SecD Morganella morganii S5
9 group_2258 HKOGLL_17840 33463 34431 1 secF Preprotein translocase subunit SecF Morganella morganii S5
10 group_2258 F4V73_RS16565 132066 133034 -1 secF protein translocase subunit SecF Morganella psychrotolerans
11 group_2259 F4V73_RS16570 133045 134892 -1 secD protein translocase subunit SecD Morganella psychrotolerans
12 group_2259 PMI_RS00375 105962 107809 1 secD protein translocase subunit SecD Proteus mirabilis HI4320
13 group_2258 PMI_RS00380 107820 108788 1 secF protein translocase subunit SecF Proteus mirabilis HI4320