PF07385


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF07385, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF07385
Description D-lyxose isomerase

Occurence in the database

PF07385 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2665 FBDBKF_04685 138933 139478 -1 ydaE D-lyxose ketol-isomerase Morganella morganii S1
1 group_2665 EHELCC_05975 198390 198935 -1 ydaE D-lyxose ketol-isomerase Morganella morganii S2
2 group_2665 NLDBIP_06295 239455 240000 -1 ydaE D-lyxose ketol-isomerase Morganella morganii S4
3 group_2665 LHKJJB_03175 216979 217524 -1 ydaE D-lyxose ketol-isomerase Morganella morganii S3
4 group_2665 HKOGLL_06650 138843 139388 -1 ydaE D-lyxose ketol-isomerase Morganella morganii S5
5 group_2665 F4V73_RS09160 1917666 1918211 -1 D-lyxose/D-mannose family sugar isomerase Morganella psychrotolerans