Homologs in group_2665

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04685 FBDBKF_04685 100.0 Morganella morganii S1 ydaE D-lyxose ketol-isomerase
EHELCC_05975 EHELCC_05975 100.0 Morganella morganii S2 ydaE D-lyxose ketol-isomerase
LHKJJB_03175 LHKJJB_03175 100.0 Morganella morganii S3 ydaE D-lyxose ketol-isomerase
HKOGLL_06650 HKOGLL_06650 100.0 Morganella morganii S5 ydaE D-lyxose ketol-isomerase
F4V73_RS09160 F4V73_RS09160 89.0 Morganella psychrotolerans - D-lyxose/D-mannose family sugar isomerase

Distribution of the homologs in the orthogroup group_2665

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2665

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
D9RZ53 1.4e-66 204 58 1 167 1 Toce_1877 D-lyxose/D-mannose isomerase Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P)
A3E7Z6 3.66e-57 180 51 2 168 1 None D-lyxose ketol-isomerase Cohnella laeviribosi
A0A256XLS3 3.75e-56 177 51 1 171 1 B6U94_07925 D-lyxose ketol-isomerase Thermofilum sp. (strain ex4484_79)
P96578 1.99e-53 170 52 1 162 1 ydaE Probable D-lyxose ketol-isomerase Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_06295
Feature type CDS
Gene ydaE
Product D-lyxose ketol-isomerase
Location 239455 - 240000 (strand: -1)
Length 546 (nucleotides) / 181 (amino acids)

Contig

Accession ZDB_521
Length 325332 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2665
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF07385 D-lyxose isomerase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3822 Carbohydrate transport and metabolism (G) G D-lyxose ketol-isomerase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K09988 D-lyxose ketol-isomerase [EC:5.3.1.15] Pentose and glucuronate interconversions -

Protein Sequence

MNKQPYIAESLAVLEQAHIILTEAEKQHIEIAHFNLPDYPRSGLQLLTYCNSPLYCAKELVLFADQTCPEHRHPPYKDRPGKQETFRCRWGEVYLFVDDPALTLNQDAQGNPVCRPPQGDEEWYTCDRFILLRPGEQYTIMPDTRHWFKAGPQGAVVSEFSTENTDEYDIFTDPRIKRLEC

Flanking regions ( +/- flanking 50bp)

TATCTGTGACAAGGCTATAATGATAACGATATCATTCAGGAGAGAGGCAGATGAATAAACAGCCGTATATCGCGGAATCACTGGCGGTTCTGGAACAGGCACATATCATTCTGACAGAAGCGGAAAAGCAGCATATTGAAATTGCTCACTTTAATCTGCCGGATTATCCCCGCTCGGGTCTGCAACTGCTCACGTACTGCAACAGCCCGCTGTACTGCGCCAAAGAGCTGGTTCTCTTTGCTGACCAGACCTGTCCGGAGCACCGTCATCCGCCGTACAAAGACCGGCCGGGTAAGCAGGAAACTTTCCGCTGCCGCTGGGGTGAGGTGTATCTGTTTGTGGATGATCCTGCGCTGACACTGAATCAGGATGCTCAGGGCAATCCGGTCTGCCGTCCGCCGCAGGGGGATGAGGAATGGTACACCTGTGACCGCTTTATTCTGCTGCGCCCGGGAGAGCAGTACACCATCATGCCGGATACCCGCCACTGGTTTAAAGCCGGGCCGCAGGGCGCGGTGGTGTCGGAGTTCTCCACAGAAAACACCGATGAATACGACATTTTTACCGATCCGCGGATAAAAAGACTCGAGTGTTAAAAAGTTGTTAGTGTCGGTTTAAGTAATAAAAAGCGTGTTTTTCACGTGAC