Homologs in group_2665

Help

5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04685 FBDBKF_04685 89.0 Morganella morganii S1 ydaE D-lyxose ketol-isomerase
EHELCC_05975 EHELCC_05975 89.0 Morganella morganii S2 ydaE D-lyxose ketol-isomerase
NLDBIP_06295 NLDBIP_06295 89.0 Morganella morganii S4 ydaE D-lyxose ketol-isomerase
LHKJJB_03175 LHKJJB_03175 89.0 Morganella morganii S3 ydaE D-lyxose ketol-isomerase
HKOGLL_06650 HKOGLL_06650 89.0 Morganella morganii S5 ydaE D-lyxose ketol-isomerase

Distribution of the homologs in the orthogroup group_2665

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_2665

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
D9RZ53 4.23e-66 203 59 1 166 1 Toce_1877 D-lyxose/D-mannose isomerase Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P)
A3E7Z6 1.69e-57 181 51 1 167 1 None D-lyxose ketol-isomerase Cohnella laeviribosi
A0A256XLS3 1.95e-57 181 52 2 172 1 B6U94_07925 D-lyxose ketol-isomerase Thermofilum sp. (strain ex4484_79)
P96578 1.04e-52 168 51 1 162 1 ydaE Probable D-lyxose ketol-isomerase Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09160
Feature type CDS
Gene -
Product D-lyxose/D-mannose family sugar isomerase
Location 1917666 - 1918211 (strand: -1)
Length 546 (nucleotides) / 181 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2665
Orthogroup size 6
N. genomes 6

Actions

Genomic region

Domains

PF07385 D-lyxose isomerase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3822 Carbohydrate transport and metabolism (G) G D-lyxose ketol-isomerase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K09988 D-lyxose ketol-isomerase [EC:5.3.1.15] Pentose and glucuronate interconversions -

Protein Sequence

MNKQRYITESLAILEKGHIVLTESEKHNIEIAHFNLPDYPRSGLQLLTYYNSPHYCAKELVLFADQTCPEHRHPPYKTRPGKQETFRCRWGEVYLFVDSPSLTLNQDAQGNPVYRPPEGDEQWYTCDRFILLRPGEQYTIAPNTRHWFKAGPQGTVVSEFSTENTDEYDIFTDPRIKRLEC

Flanking regions ( +/- flanking 50bp)

GTAAGGGTATAATGATACCGATATCATTTCGCGGAGGTACAGAGATGCAGATGAATAAACAACGCTATATCACTGAATCATTGGCAATACTGGAGAAAGGACACATTGTCCTGACAGAGTCTGAAAAGCATAACATCGAAATTGCTCATTTTAATCTGCCTGATTATCCCCGTTCAGGCCTGCAATTGCTGACGTACTACAACAGCCCGCATTACTGTGCGAAAGAGTTGGTACTGTTTGCAGACCAAACCTGCCCCGAACACCGCCATCCGCCGTATAAAACGCGCCCCGGCAAACAGGAAACCTTCCGCTGCCGCTGGGGGGAAGTGTACTTATTTGTTGACTCCCCGTCACTGACACTCAATCAGGATGCACAGGGAAATCCGGTTTACCGCCCGCCGGAAGGTGATGAACAGTGGTATACCTGTGATCGCTTTATTTTATTGCGCCCGGGTGAGCAGTACACCATTGCACCAAATACCCGCCACTGGTTTAAAGCCGGCCCGCAGGGGACGGTGGTTTCAGAGTTCTCGACTGAGAACACAGACGAATACGATATTTTTACCGATCCCCGGATAAAACGGCTGGAATGTTAAAATAGCTGACACGGTTTTTCTCAGCAAAAAGACACCTTTTCGCGTGACTG