PF07073


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF07073, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF07073
Description Modulator of Rho-dependent transcription termination (ROF)

Occurence in the database

PF07073 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1047 FBDBKF_05920 7705 7971 1 rof Rho-binding antiterminator Morganella morganii S1
1 group_1047 EHELCC_08965 8277 8543 1 rof Rho-binding antiterminator Morganella morganii S2
2 group_1047 NLDBIP_09345 8277 8543 1 rof Rho-binding antiterminator Morganella morganii S4
3 group_1047 LHKJJB_08410 208695 208961 -1 rof Rho-binding antiterminator Morganella morganii S3
4 group_1047 HKOGLL_07960 208695 208961 -1 rof Rho-binding antiterminator Morganella morganii S5
5 group_1047 F4V73_RS15975 205483 205749 -1 rof Rho-binding antiterminator Morganella psychrotolerans
6 group_1047 PMI_RS11190 2461997 2462257 1 rof Rho-binding antiterminator Proteus mirabilis HI4320