PF06835


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF06835, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF06835
Description Lipopolysaccharide-assembly, LptC-related

Occurence in the database

PF06835 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_732 FBDBKF_03235 48796 49377 1 lptC LPS export ABC transporter periplasmic protein LptC Morganella morganii S1
1 group_732 EHELCC_07300 197726 198307 -1 lptC LPS export ABC transporter periplasmic protein LptC Morganella morganii S2
2 group_732 NLDBIP_07625 197599 198180 -1 lptC LPS export ABC transporter periplasmic protein LptC Morganella morganii S4
3 group_732 LHKJJB_07160 161345 161926 -1 lptC LPS export ABC transporter periplasmic protein LptC Morganella morganii S3
4 group_732 HKOGLL_03770 71461 72042 1 lptC LPS export ABC transporter periplasmic protein LptC Morganella morganii S5
5 group_732 F4V73_RS11685 487269 487850 -1 lptC LPS export ABC transporter periplasmic protein LptC Morganella psychrotolerans
6 group_732 PMI_RS18165 3988067 3988645 -1 lptC LPS export ABC transporter periplasmic protein LptC Proteus mirabilis HI4320