Homologs in group_804

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_07300 EHELCC_07300 100.0 Morganella morganii S2 lptC LPS export ABC transporter periplasmic protein LptC
NLDBIP_07625 NLDBIP_07625 100.0 Morganella morganii S4 lptC LPS export ABC transporter periplasmic protein LptC
LHKJJB_07160 LHKJJB_07160 100.0 Morganella morganii S3 lptC LPS export ABC transporter periplasmic protein LptC
HKOGLL_03770 HKOGLL_03770 100.0 Morganella morganii S5 lptC LPS export ABC transporter periplasmic protein LptC
F4V73_RS11685 F4V73_RS11685 88.6 Morganella psychrotolerans lptC LPS export ABC transporter periplasmic protein LptC
PMI_RS18165 PMI_RS18165 66.7 Proteus mirabilis HI4320 lptC LPS export ABC transporter periplasmic protein LptC

Distribution of the homologs in the orthogroup group_804

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_804

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ADW2 1.63e-70 215 52 1 193 1 lptC Lipopolysaccharide export system protein LptC Shigella flexneri
P0ADV9 1.63e-70 215 52 1 193 1 lptC Lipopolysaccharide export system protein LptC Escherichia coli (strain K12)
P0ADW0 1.63e-70 215 52 1 193 3 lptC Lipopolysaccharide export system protein LptC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ADW1 1.63e-70 215 52 1 193 3 lptC Lipopolysaccharide export system protein LptC Escherichia coli O157:H7
P45075 3.69e-29 110 32 2 198 3 lptC Lipopolysaccharide export system protein LptC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_03235
Feature type CDS
Gene lptC
Product LPS export ABC transporter periplasmic protein LptC
Location 48796 - 49377 (strand: 1)
Length 582 (nucleotides) / 193 (amino acids)
In genomic island -

Contig

Accession contig_3
Length 210665 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_804
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF06835 Lipopolysaccharide-assembly, LptC-related

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3117 Cell wall/membrane/envelope biogenesis (M) M Lipopolysaccharide export system protein LptC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11719 lipopolysaccharide export system protein LptC - -

Protein Sequence

MSKFKLWLIIILALIALGLLGWNLSVTRSGDTDGKIVEDGTPTYKTQTSSTLAYEPTGLLAYRLNADDVQNFAQEKITWFTNPVLTTYDPDKTATWTIRAKRAKLTNDRMLYLYGDVQVDSLTTDTQLRQITTDNAEVNLTTQDVSSDDKVTITGTGLRSVGLQMRGNLRNRNAELIKDVQTYYEIPNESKHP

Flanking regions ( +/- flanking 50bp)

GTCCGTCTGAAGAGAATTTCATTGGTTATAATGGCTTTATCAGGGATCTCATGAGTAAATTTAAGCTTTGGCTGATCATTATTCTGGCGCTTATCGCCCTCGGTCTGCTCGGCTGGAACCTGTCGGTCACCCGTTCAGGTGACACCGACGGTAAGATTGTGGAAGACGGTACGCCGACGTATAAAACCCAAACGTCCTCAACCCTGGCTTACGAGCCGACAGGGCTGCTGGCGTACCGGCTGAATGCGGATGATGTGCAGAACTTTGCTCAGGAAAAAATAACCTGGTTTACTAATCCGGTGCTGACCACCTACGACCCTGATAAAACCGCCACCTGGACGATTCGTGCAAAGCGGGCCAAATTAACCAATGACAGAATGTTATATTTATACGGTGATGTTCAGGTTGACAGCCTGACCACCGATACACAGCTCAGGCAGATCACCACGGATAACGCCGAAGTCAATCTGACAACCCAGGATGTGAGTTCTGACGATAAAGTCACCATCACGGGAACAGGACTGCGTTCCGTCGGATTGCAGATGCGGGGTAATTTACGCAATCGTAATGCGGAACTGATCAAAGATGTACAGACTTACTATGAGATCCCAAATGAAAGCAAACATCCTTAATACTCTGATTGCAACAGCAATTCTGGCCGTCAGTGTCCCTGCTTTGGCGT