Homologs in group_804

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03235 FBDBKF_03235 66.7 Morganella morganii S1 lptC LPS export ABC transporter periplasmic protein LptC
EHELCC_07300 EHELCC_07300 66.7 Morganella morganii S2 lptC LPS export ABC transporter periplasmic protein LptC
NLDBIP_07625 NLDBIP_07625 66.7 Morganella morganii S4 lptC LPS export ABC transporter periplasmic protein LptC
LHKJJB_07160 LHKJJB_07160 66.7 Morganella morganii S3 lptC LPS export ABC transporter periplasmic protein LptC
HKOGLL_03770 HKOGLL_03770 66.7 Morganella morganii S5 lptC LPS export ABC transporter periplasmic protein LptC
F4V73_RS11685 F4V73_RS11685 65.6 Morganella psychrotolerans lptC LPS export ABC transporter periplasmic protein LptC

Distribution of the homologs in the orthogroup group_804

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_804

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ADW2 3.22e-59 186 48 2 194 1 lptC Lipopolysaccharide export system protein LptC Shigella flexneri
P0ADV9 3.22e-59 186 48 2 194 1 lptC Lipopolysaccharide export system protein LptC Escherichia coli (strain K12)
P0ADW0 3.22e-59 186 48 2 194 3 lptC Lipopolysaccharide export system protein LptC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ADW1 3.22e-59 186 48 2 194 3 lptC Lipopolysaccharide export system protein LptC Escherichia coli O157:H7
P45075 2.28e-33 121 35 3 205 3 lptC Lipopolysaccharide export system protein LptC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS18165
Feature type CDS
Gene lptC
Product LPS export ABC transporter periplasmic protein LptC
Location 3988067 - 3988645 (strand: -1)
Length 579 (nucleotides) / 192 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_804
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF06835 Lipopolysaccharide-assembly, LptC-related

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3117 Cell wall/membrane/envelope biogenesis (M) M Lipopolysaccharide export system protein LptC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11719 lipopolysaccharide export system protein LptC - -

Protein Sequence

MNKLKSWFTLILAIIALGLIGWNYTNNTELDDGKIVEDGQPTYQSKSSISFVYEPTGILGYKLVADDVKNYAQQKFTWFTNPVLTTYSPTGDATWTVRANKAKLTNSKMLYLYGDVQIDSLTDDSQLQRINTENAIADLDTQDVSSDDEVTIIGVGLKSVGLKMRGNLREKRAELIEQVNTYYEIPNESKNP

Flanking regions ( +/- flanking 50bp)

CGACTTGAAGAAGCTAAAGGTTTATCGATTTAAACGTATAACGACACAGAATGAATAAATTAAAATCCTGGTTTACCCTGATTTTAGCCATTATTGCTCTTGGGCTGATTGGCTGGAACTATACTAACAATACTGAGCTTGATGATGGAAAGATTGTTGAAGATGGTCAACCCACCTACCAATCTAAATCATCAATATCCTTTGTTTATGAACCAACAGGTATACTGGGATATAAACTAGTTGCTGATGATGTCAAAAACTATGCTCAGCAAAAGTTTACATGGTTTACTAATCCTGTCTTAACGACTTATTCGCCGACAGGAGATGCAACATGGACAGTGCGTGCAAATAAAGCCAAACTGACAAACAGTAAAATGCTCTATCTTTATGGCGACGTTCAAATTGATAGTTTAACTGATGACTCCCAACTTCAGCGGATCAACACAGAAAATGCTATCGCAGATCTGGATACACAAGATGTTTCCTCTGATGATGAAGTGACTATTATCGGCGTCGGACTGAAATCAGTCGGCTTAAAAATGCGAGGCAATCTGCGTGAAAAACGTGCAGAGCTGATTGAACAGGTGAACACCTATTATGAGATCCCTAATGAATCGAAAAATCCGTAATACACTAATTATCAGTACGTTATTCTCAATAAGTGTCCCAGTTATGGCAC