PF06790


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF06790, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF06790
Description Uncharacterised protein family (UPF0259)

Occurence in the database

PF06790 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_952 FBDBKF_05195 46541 47317 1 UPF0259 membrane protein CRX48_06510 Morganella morganii S1
1 group_952 EHELCC_12395 134177 134953 -1 UPF0259 membrane protein CRX48_06510 Morganella morganii S2
2 group_952 NLDBIP_12735 134132 134908 -1 UPF0259 membrane protein CRX48_06510 Morganella morganii S4
3 group_952 LHKJJB_12595 134177 134953 -1 UPF0259 membrane protein CRX48_06510 Morganella morganii S3
4 group_952 HKOGLL_11210 134177 134953 -1 UPF0259 membrane protein CRX48_06510 Morganella morganii S5
5 group_952 F4V73_RS05650 1201967 1202743 1 YciC family protein Morganella psychrotolerans
6 group_952 PMI_RS06520 1430472 1431233 1 YciC family protein Proteus mirabilis HI4320