PF06472


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF06472, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 12 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF06472
Description ABC transporter transmembrane region 2

Occurence in the database

PF06472 is associated with 12 different proteins (see tab "Protein list" and "Profile")
The 12 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3178 FBDBKF_01220 228670 230355 -1 yddA ABC-type uncharacterized transport system, permease and ATPase components Morganella morganii S1
1 group_2310 FBDBKF_17735 5584 7284 1 yddA ABC-type uncharacterized transport system, permease and ATPase components Morganella morganii S1
2 group_3178 EHELCC_00325 78513 80198 1 yddA ABC-type uncharacterized transport system, permease and ATPase components Morganella morganii S2
3 group_2310 EHELCC_09760 185016 186716 1 yddA ABC-type uncharacterized transport system, permease and ATPase components Morganella morganii S2
4 group_3178 NLDBIP_03135 599938 601623 -1 yddA ABC-type uncharacterized transport system, permease and ATPase components Morganella morganii S4
5 group_2310 NLDBIP_10140 185016 186716 1 yddA ABC-type uncharacterized transport system, permease and ATPase components Morganella morganii S4
6 group_3178 LHKJJB_04650 207179 208864 -1 yddA ABC-type uncharacterized transport system, permease and ATPase components Morganella morganii S3
7 group_2310 LHKJJB_07615 30522 32222 -1 yddA ABC-type uncharacterized transport system, permease and ATPase components Morganella morganii S3
8 group_3178 HKOGLL_02395 78718 80403 1 yddA ABC-type uncharacterized transport system, permease and ATPase components Morganella morganii S5
9 group_2310 HKOGLL_07165 30522 32222 -1 yddA ABC-type uncharacterized transport system, permease and ATPase components Morganella morganii S5
10 group_2310 F4V73_RS15225 28102 29802 -1 ABC transporter ATP-binding protein/permease Morganella psychrotolerans
11 group_2310 PMI_RS18435 4045946 4047655 -1 ABC transporter ATP-binding protein/permease Proteus mirabilis HI4320