PF06440


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF06440, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 12 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF06440
Description DNA polymerase III, theta subunit

Occurence in the database

PF06440 is associated with 12 different proteins (see tab "Protein list" and "Profile")
The 12 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_580 FBDBKF_01660 24908 25141 -1 DNA polymerase III subunit theta Morganella morganii S1
1 group_3369 FBDBKF_11520 102241 102465 -1 DNA polymerase II Morganella morganii S1
2 group_580 EHELCC_02130 412728 412961 -1 DNA polymerase III subunit theta Morganella morganii S2
3 group_3369 EHELCC_17440 584 808 -1 DNA polymerase II Morganella morganii S2
4 group_580 NLDBIP_01330 267175 267408 1 DNA polymerase III subunit theta Morganella morganii S4
5 group_3369 NLDBIP_18650 1331 1555 -1 DNA polymerase II Morganella morganii S4
6 group_580 LHKJJB_00705 125277 125510 -1 DNA polymerase III subunit theta Morganella morganii S3
7 group_3369 LHKJJB_17880 584 808 -1 DNA polymerase II Morganella morganii S3
8 group_580 HKOGLL_00745 130788 131021 -1 DNA polymerase III subunit theta Morganella morganii S5
9 group_3369 HKOGLL_18770 23423 23647 1 DNA polymerase II Morganella morganii S5
10 group_580 F4V73_RS04000 848255 848488 -1 DNA polymerase III subunit theta Morganella psychrotolerans
11 group_580 PMI_RS07820 1713879 1714103 1 DNA polymerase III subunit theta Proteus mirabilis HI4320