PF06305


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF06305, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF06305
Description Lipopolysaccharide assembly protein A domain

Occurence in the database

PF06305 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_936 FBDBKF_05085 22421 22726 -1 yciS DUF1049 domain-containing protein Morganella morganii S1
1 group_936 EHELCC_12505 158768 159073 1 yciS DUF1049 domain-containing protein Morganella morganii S2
2 group_936 NLDBIP_12845 158723 159028 1 yciS DUF1049 domain-containing protein Morganella morganii S4
3 group_936 LHKJJB_12705 158768 159073 1 yciS DUF1049 domain-containing protein Morganella morganii S3
4 group_936 HKOGLL_11320 158768 159073 1 yciS DUF1049 domain-containing protein Morganella morganii S5
5 group_936 F4V73_RS05540 1177488 1177793 -1 LapA family protein Morganella psychrotolerans
6 group_936 PMI_RS06345 1390359 1390676 -1 lipopolysaccharide assembly protein LapA domain-containing protein Proteus mirabilis HI4320