PF05683


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF05683, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF05683
Description Fumarase C-terminus

Occurence in the database

PF05683 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3071 FBDBKF_18795 5859 7517 1 ttdA Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain Morganella morganii S1
1 group_3071 EHELCC_16990 5860 7518 1 ttdA Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain Morganella morganii S2
2 group_3071 NLDBIP_18370 5859 7517 1 ttdA Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain Morganella morganii S4
3 group_3071 LHKJJB_09255 184812 186470 -1 ttdA Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain Morganella morganii S3
4 group_3071 HKOGLL_08805 184812 186470 -1 ttdA Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain Morganella morganii S5
5 group_3071 F4V73_RS13800 392549 394207 -1 fumarate hydratase Morganella psychrotolerans