PF05662


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF05662, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF05662
Description Coiled stalk of trimeric autotransporter adhesin

Occurence in the database

PF05662 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_178 FBDBKF_03960 189041 191266 -1 taaP trimeric autotransporter adhesin TaaP Morganella morganii S1
1 group_178 EHELCC_06575 55837 58062 1 taaP trimeric autotransporter adhesin TaaP Morganella morganii S2
2 group_178 NLDBIP_06900 55710 57935 1 taaP trimeric autotransporter adhesin TaaP Morganella morganii S4
3 group_178 LHKJJB_06435 19456 21681 1 taaP trimeric autotransporter adhesin TaaP Morganella morganii S3
4 group_178 HKOGLL_04495 211706 213931 -1 taaP trimeric autotransporter adhesin TaaP Morganella morganii S5
5 group_178 F4V73_RS10220 153914 154744 -1 YadA-like family protein Morganella psychrotolerans
6 group_178 PMI_RS12715 2811965 2814190 -1 taaP trimeric autotransporter adhesin TaaP Proteus mirabilis HI4320