PF05280


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF05280, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF05280
Description Flagellar transcriptional activator (FlhC)

Occurence in the database

PF05280 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_226 FBDBKF_00815 149557 150138 -1 flhC flagellar transcriptional regulator FlhC Morganella morganii S1
1 group_226 EHELCC_00730 158730 159311 1 flhC flagellar transcriptional regulator FlhC Morganella morganii S2
2 group_226 NLDBIP_02730 520825 521406 -1 flhC flagellar transcriptional regulator FlhC Morganella morganii S4
3 group_226 LHKJJB_04245 128066 128647 -1 flhC flagellar transcriptional regulator FlhC Morganella morganii S3
4 group_226 HKOGLL_02800 158935 159516 1 flhC flagellar transcriptional regulator FlhC Morganella morganii S5
5 group_226 F4V73_RS06810 1414485 1415066 -1 flhC flagellar transcriptional regulator FlhC Morganella psychrotolerans
6 group_226 PMI_RS08160 1784218 1784799 -1 flhC flagellar transcriptional regulator FlhC Proteus mirabilis HI4320
7 group_226 PMI_RS12015 2654763 2655296 1 FlhC family transcriptional regulator Proteus mirabilis HI4320