PF05025


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF05025, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF05025
Description RbsD / FucU transport protein family

Occurence in the database

PF05025 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2056 FBDBKF_15415 8639 9058 -1 rbsD D-ribose pyranase Morganella morganii S1
1 group_2056 EHELCC_15775 7939 8358 -1 rbsD D-ribose pyranase Morganella morganii S2
2 group_2056 NLDBIP_16595 72305 72724 1 rbsD D-ribose pyranase Morganella morganii S4
3 group_2056 LHKJJB_16210 7939 8358 -1 rbsD D-ribose pyranase Morganella morganii S3
4 group_2056 HKOGLL_15980 7939 8358 -1 rbsD D-ribose pyranase Morganella morganii S5
5 group_2056 F4V73_RS17730 188030 188449 1 rbsD D-ribose pyranase Morganella psychrotolerans
6 group_2056 PMI_RS00445 119810 120229 -1 rbsD D-ribose pyranase Proteus mirabilis HI4320