PF04965


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04965, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 11 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04965
Description Baseplate wedge protein gp25

Occurence in the database

PF04965 is associated with 11 different proteins (see tab "Protein list" and "Profile")
The 11 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_546 FBDBKF_01300 251135 251572 1 tssE type VI secretion system baseplate subunit TssE Morganella morganii S1
1 group_546 EHELCC_00245 57296 57733 -1 tssE type VI secretion system baseplate subunit TssE Morganella morganii S2
2 group_546 NLDBIP_03215 622403 622840 1 tssE type VI secretion system baseplate subunit TssE Morganella morganii S4
3 group_546 LHKJJB_04730 229644 230081 1 tssE type VI secretion system baseplate subunit TssE Morganella morganii S3
4 group_546 HKOGLL_02315 57501 57938 -1 tssE type VI secretion system baseplate subunit TssE Morganella morganii S5
5 group_3800 F4V73_RS00080 21449 21892 -1 tssE type VI secretion system baseplate subunit TssE Morganella psychrotolerans
6 group_546 F4V73_RS02370 504446 504883 -1 tssE type VI secretion system baseplate subunit TssE Morganella psychrotolerans
7 group_3800 F4V73_RS09310 1955551 1956045 -1 GPW/gp25 family protein Morganella psychrotolerans
8 group_4178 F4V73_RS16730 168931 169359 -1 tssE type VI secretion system baseplate subunit TssE Morganella psychrotolerans
9 group_546 PMI_RS03675 827377 827808 -1 tssE type VI secretion system baseplate subunit TssE Proteus mirabilis HI4320
10 group_4501 PMI_RS09765 2128201 2128539 -1 GPW/gp25 family protein Proteus mirabilis HI4320