PF04957


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04957, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04957
Description Ribosome modulation factor

Occurence in the database

PF04957 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1256 FBDBKF_07320 148765 148932 1 rmf ribosome modulation factor Morganella morganii S1
1 group_1256 EHELCC_03650 37254 37421 -1 rmf ribosome modulation factor Morganella morganii S2
2 group_1256 NLDBIP_03650 37050 37217 -1 rmf ribosome modulation factor Morganella morganii S4
3 group_1256 LHKJJB_09480 37164 37331 -1 rmf ribosome modulation factor Morganella morganii S3
4 group_1256 HKOGLL_09495 153721 153888 1 rmf ribosome modulation factor Morganella morganii S5
5 group_1256 F4V73_RS01505 337213 337380 1 rmf ribosome modulation factor Morganella psychrotolerans
6 group_1256 PMI_RS03835 869509 869679 1 rmf ribosome modulation factor Proteus mirabilis HI4320