PF04413


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04413, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04413
Description 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)

Occurence in the database

PF04413 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2164 FBDBKF_16280 42959 44236 -1 waaA lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase Morganella morganii S1
1 group_2164 EHELCC_16315 42959 44236 -1 waaA lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase Morganella morganii S2
2 group_2164 NLDBIP_17025 17934 19211 1 waaA lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase Morganella morganii S4
3 group_2164 LHKJJB_16945 21036 22313 1 waaA lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase Morganella morganii S3
4 group_2164 HKOGLL_16895 42959 44236 -1 waaA lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase Morganella morganii S5
5 group_2164 F4V73_RS17310 95054 96331 1 waaA lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase Morganella psychrotolerans
6 group_2164 PMI_RS15660 3478833 3480110 -1 waaA lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase Proteus mirabilis HI4320