PF04403


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04403, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04403
Description Paraquat-inducible protein A

Occurence in the database

PF04403 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_293 FBDBKF_07305 144912 146189 1 pqiA membrane integrity-associated transporter subunit PqiA Morganella morganii S1
1 group_293 EHELCC_03665 39997 41274 -1 pqiA membrane integrity-associated transporter subunit PqiA Morganella morganii S2
2 group_293 NLDBIP_03665 39793 41070 -1 pqiA membrane integrity-associated transporter subunit PqiA Morganella morganii S4
3 group_293 LHKJJB_09495 39907 41184 -1 pqiA membrane integrity-associated transporter subunit PqiA Morganella morganii S3
4 group_293 HKOGLL_09480 149868 151145 1 pqiA membrane integrity-associated transporter subunit PqiA Morganella morganii S5
5 group_293 F4V73_RS01490 333334 334617 1 pqiA membrane integrity-associated transporter subunit PqiA Morganella psychrotolerans
6 group_293 PMI_RS03815 865008 866312 1 pqiA membrane integrity-associated transporter subunit PqiA Proteus mirabilis HI4320
7 group_293 PMI_RS04920 1075696 1076952 -1 membrane integrity lipid transport subunit YebS Proteus mirabilis HI4320