PF04384


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04384, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04384
Description Iron-sulphur cluster assembly

Occurence in the database

PF04384 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_520 FBDBKF_01105 206942 207142 -1 iscX Fe-S cluster assembly protein IscX Morganella morganii S1
1 group_520 EHELCC_00440 101726 101926 1 iscX Fe-S cluster assembly protein IscX Morganella morganii S2
2 group_520 NLDBIP_03020 578210 578410 -1 iscX Fe-S cluster assembly protein IscX Morganella morganii S4
3 group_520 LHKJJB_04535 185451 185651 -1 iscX Fe-S cluster assembly protein IscX Morganella morganii S3
4 group_520 HKOGLL_02510 101931 102131 1 iscX Fe-S cluster assembly protein IscX Morganella morganii S5
5 group_520 F4V73_RS07175 1494900 1495100 -1 iscX Fe-S cluster assembly protein IscX Morganella psychrotolerans
6 group_520 PMI_RS09150 1997036 1997230 -1 iscX Fe-S cluster assembly protein IscX Proteus mirabilis HI4320