Homologs in group_520

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01105 FBDBKF_01105 90.9 Morganella morganii S1 iscX Fe-S cluster assembly protein IscX
EHELCC_00440 EHELCC_00440 90.9 Morganella morganii S2 iscX Fe-S cluster assembly protein IscX
NLDBIP_03020 NLDBIP_03020 90.9 Morganella morganii S4 iscX Fe-S cluster assembly protein IscX
LHKJJB_04535 LHKJJB_04535 90.9 Morganella morganii S3 iscX Fe-S cluster assembly protein IscX
HKOGLL_02510 HKOGLL_02510 90.9 Morganella morganii S5 iscX Fe-S cluster assembly protein IscX
PMI_RS09150 PMI_RS09150 89.1 Proteus mirabilis HI4320 iscX Fe-S cluster assembly protein IscX

Distribution of the homologs in the orthogroup group_520

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_520

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8FF46 3.37e-37 121 84 0 66 3 iscX Protein IscX Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0C0M1 6.61e-36 117 83 0 66 3 iscX Protein IscX Shigella flexneri
P0C0L9 6.61e-36 117 83 0 66 1 iscX Protein IscX Escherichia coli (strain K12)
P0C0M0 6.61e-36 117 83 0 66 1 iscX Protein IscX Escherichia coli O157:H7
P44668 9.22e-26 92 67 0 64 3 iscX Protein IscX Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q51384 8.16e-15 64 45 0 64 4 PA3808 Uncharacterized protein PA3808 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07175
Feature type CDS
Gene iscX
Product Fe-S cluster assembly protein IscX
Location 1494900 - 1495100 (strand: -1)
Length 201 (nucleotides) / 66 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_520
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04384 Iron-sulphur cluster assembly

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2975 Posttranslational modification, protein turnover, chaperones (O) O Fe-S-cluster formation regulator IscX/YfhJ

Protein Sequence

MGLKWQDTREIGEALYDLYPDTDPKTVRFTDMHQWICALDDFDDEPEKSNEKVLEAILLVWLDECE

Flanking regions ( +/- flanking 50bp)

CTAAGTACACTGTTAATCACGCGCGTGAGCACGGATAAAGGAACACAGATATGGGACTGAAATGGCAGGATACCCGGGAAATCGGCGAAGCACTGTATGATTTATATCCGGATACCGACCCGAAAACGGTGCGTTTCACTGATATGCATCAGTGGATCTGTGCGCTGGACGATTTTGACGATGAGCCTGAAAAATCTAACGAAAAAGTATTAGAAGCAATTTTGTTAGTCTGGCTCGACGAATGTGAATGACACTTTTTGTTACGCATGTCAGGCCGCACAATTATGTTACCGTGCGGTCT