PF04359


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04359, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04359
Description Protein of unknown function (DUF493)

Occurence in the database

PF04359 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1559 FBDBKF_10100 112916 113179 1 ybeD DUF493 domain-containing protein Morganella morganii S1
1 group_1559 EHELCC_04900 304881 305144 1 ybeD DUF493 domain-containing protein Morganella morganii S2
2 group_1559 NLDBIP_04900 304677 304940 1 ybeD DUF493 domain-containing protein Morganella morganii S4
3 group_1559 LHKJJB_13730 30438 30701 -1 ybeD DUF493 domain-containing protein Morganella morganii S3
4 group_1559 HKOGLL_12805 113697 113960 1 ybeD DUF493 domain-containing protein Morganella morganii S5
5 group_1559 F4V73_RS00235 58313 58576 -1 ybeD DUF493 family protein YbeD Morganella psychrotolerans
6 group_1559 PMI_RS02080 489467 489730 -1 ybeD DUF493 family protein YbeD Proteus mirabilis HI4320