PF04348


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04348, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04348
Description LppC putative lipoprotein

Occurence in the database

PF04348 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_707 FBDBKF_03065 12136 13890 1 lpoA Outer membrane lipoprotein LpoA, binds and activates PBP1a Morganella morganii S1
1 group_707 EHELCC_07470 233213 234967 -1 lpoA Outer membrane lipoprotein LpoA, binds and activates PBP1a Morganella morganii S2
2 group_707 NLDBIP_07795 233086 234840 -1 lpoA Outer membrane lipoprotein LpoA, binds and activates PBP1a Morganella morganii S4
3 group_707 LHKJJB_07330 196832 198634 -1 lpoA Outer membrane lipoprotein LpoA, binds and activates PBP1a Morganella morganii S3
4 group_707 HKOGLL_03600 34801 36555 1 lpoA Outer membrane lipoprotein LpoA, binds and activates PBP1a Morganella morganii S5
5 group_707 F4V73_RS11855 525354 527156 -1 penicillin-binding protein activator Morganella psychrotolerans
6 group_707 PMI_RS18370 4030692 4032464 -1 penicillin-binding protein activator Proteus mirabilis HI4320