PF04313


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04313, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 11 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04313
Description Type I restriction enzyme R protein N terminus (HSDR_N)

Occurence in the database

PF04313 is associated with 11 different proteins (see tab "Protein list" and "Profile")
The 11 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3149 FBDBKF_00260 38021 39175 1 Type I restriction endonuclease subunit R Morganella morganii S1
1 group_3303 FBDBKF_10270 5642 8074 1 hsdR Type I restriction enzyme EcoEI endonuclease subunit Morganella morganii S1
2 group_388 FBDBKF_16605 2201 5323 -1 Type I restriction enzyme endonuclease subunit Morganella morganii S1
3 group_3149 EHELCC_01285 269693 270847 -1 Type I restriction endonuclease subunit R Morganella morganii S2
4 group_3303 EHELCC_14605 5632 8064 1 hsdR Type I restriction enzyme EcoEI endonuclease subunit Morganella morganii S2
5 group_3149 NLDBIP_02175 409289 410443 1 Type I restriction endonuclease subunit R Morganella morganii S4
6 group_3303 NLDBIP_14435 5632 8064 1 hsdR Type I restriction enzyme EcoEI endonuclease subunit Morganella morganii S4
7 group_3149 LHKJJB_03690 16530 17684 1 Type I restriction endonuclease subunit R Morganella morganii S3
8 group_3303 LHKJJB_14910 133662 136094 -1 hsdR Type I restriction enzyme EcoEI endonuclease subunit Morganella morganii S3
9 group_3149 HKOGLL_03355 269898 271052 -1 Type I restriction endonuclease subunit R Morganella morganii S5
10 group_3303 HKOGLL_13530 133662 136094 -1 hsdR Type I restriction enzyme EcoEI endonuclease subunit Morganella morganii S5