PF04304


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04304, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04304
Description Protein of unknown function (DUF454)

Occurence in the database

PF04304 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1828 FBDBKF_13535 84302 84718 -1 ybaN DUF454 domain-containing protein Morganella morganii S1
1 group_1828 EHELCC_08560 190473 190889 1 ybaN DUF454 domain-containing protein Morganella morganii S2
2 group_1828 NLDBIP_08885 190473 190889 1 ybaN DUF454 domain-containing protein Morganella morganii S4
3 group_1828 LHKJJB_05380 66270 66686 -1 ybaN DUF454 domain-containing protein Morganella morganii S3
4 group_1828 HKOGLL_05535 175064 175480 1 ybaN DUF454 domain-containing protein Morganella morganii S5
5 group_1828 F4V73_RS03225 689113 689535 1 DUF454 family protein Morganella psychrotolerans
6 group_1828 PMI_RS07585 1655816 1656190 -1 DUF454 family protein Proteus mirabilis HI4320