PF04262


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04262, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04262
Description Glutamate-cysteine ligase

Occurence in the database

PF04262 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2036 FBDBKF_15275 64152 65711 1 gshA glutamate--cysteine ligase Morganella morganii S1
1 group_2036 EHELCC_10970 19195 20754 -1 gshA glutamate--cysteine ligase Morganella morganii S2
2 group_2036 NLDBIP_11315 19195 20754 -1 gshA glutamate--cysteine ligase Morganella morganii S4
3 group_2036 LHKJJB_11175 19195 20754 -1 gshA glutamate--cysteine ligase Morganella morganii S3
4 group_2036 HKOGLL_09785 19195 20754 -1 gshA glutamate--cysteine ligase Morganella morganii S5
5 group_2036 F4V73_RS12170 18522 20081 -1 gshA glutamate--cysteine ligase Morganella psychrotolerans
6 group_2036 PMI_RS01835 431843 433423 1 gshA glutamate--cysteine ligase Proteus mirabilis HI4320