PF04239


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04239, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04239
Description YetF C-terminal domain

Occurence in the database

PF04239 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1845 FBDBKF_13795 52632 53309 -1 ycaP DUF421 domain-containing protein Morganella morganii S1
1 group_1845 EHELCC_11465 137508 138185 -1 ycaP DUF421 domain-containing protein Morganella morganii S2
2 group_1845 NLDBIP_11810 137508 138185 -1 ycaP DUF421 domain-containing protein Morganella morganii S4
3 group_1845 LHKJJB_11670 137508 138185 -1 ycaP DUF421 domain-containing protein Morganella morganii S3
4 group_1845 HKOGLL_10280 137508 138185 -1 ycaP DUF421 domain-containing protein Morganella morganii S5
5 group_1845 F4V73_RS12665 130910 131587 -1 DUF421 domain-containing protein Morganella psychrotolerans
6 group_1845 PMI_RS01220 299567 300241 1 DUF421 domain-containing protein Proteus mirabilis HI4320