Orthogroup:group_1883


Homologs in group_1883

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_14080 FBDBKF_14080 Morganella morganii S1 menH 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxy late synthase
EHELCC_08200 EHELCC_08200 Morganella morganii S2 menH 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxy late synthase
NLDBIP_08525 NLDBIP_08525 Morganella morganii S4 menH 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxy late synthase
LHKJJB_05740 LHKJJB_05740 Morganella morganii S3 menH 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxy late synthase
HKOGLL_05175 HKOGLL_05175 Morganella morganii S5 menH 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxy late synthase
F4V73_RS02855 F4V73_RS02855 Morganella psychrotolerans menH 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase
PMI_RS08560 PMI_RS08560 Proteus mirabilis HI4320 menH 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase

Distribution of group_1883 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1883 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1883

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1883.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 menH 7

Product

# Product Occurence
1 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxy late synthase 5
2 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0596 7 HR Coenzyme transport and metabolism (H)
General function prediction only (R)		 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold

Kegg Ortholog Annotation(s)

Pfam domain Annotation(s)

Domain ID Occurences Description
PF12697 7 Alpha/beta hydrolase family

Annotations of the 108 SwissProt hits

Annotation Number of occurrences
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 61
AB hydrolase superfamily protein FGSG_00045 1
AB hydrolase superfamily protein YdjP 1
Biotin biosynthesis bifunctional protein BioHC 2
Esterase Rv0045c 1
Esterase YbfF 1
Ethanol acetyltransferase 1 4
Pimeloyl-[acyl-carrier protein] methyl ester esterase 24
Probable alcohol acetyltransferase 2
Protein PHYLLO, chloroplastic 1
Putative 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 2
Putative esterase/lipase 1 1
Putative esterase/lipase HI_0193 1
sn-1-specific diacylglycerol lipase ABHD11 6

Protein length

Min length 255
Max length 261
Mean length (sd) 257.3 (1.8)
Median length 257.0

Protein length distribution