PF04175


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04175, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04175
Description Protein of unknown function (DUF406)

Occurence in the database

PF04175 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1933 FBDBKF_14370 74953 75249 -1 yfcZ DUF406 domain-containing protein Morganella morganii S1
1 group_1933 EHELCC_07910 41736 42032 1 yfcZ DUF406 domain-containing protein Morganella morganii S2
2 group_1933 NLDBIP_08235 41736 42032 1 yfcZ DUF406 domain-containing protein Morganella morganii S4
3 group_1933 LHKJJB_06030 215127 215423 -1 yfcZ DUF406 domain-containing protein Morganella morganii S3
4 group_1933 HKOGLL_04885 26327 26623 1 yfcZ DUF406 domain-containing protein Morganella morganii S5
5 group_1933 F4V73_RS02535 535269 535565 1 YfcZ/YiiS family protein Morganella psychrotolerans
6 group_1933 PMI_RS08870 1940352 1940648 -1 YfcZ/YiiS family protein Proteus mirabilis HI4320