PF03942


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03942, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03942
Description DTW domain

Occurence in the database

PF03942 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1573 FBDBKF_10200 133680 134384 1 tapT tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain Morganella morganii S1
1 group_1573 EHELCC_05000 325645 326349 1 tapT tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain Morganella morganii S2
2 group_1573 NLDBIP_05000 325441 326145 1 tapT tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain Morganella morganii S4
3 group_1573 LHKJJB_13630 9233 9937 -1 tapT tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain Morganella morganii S3
4 group_1573 HKOGLL_12905 134461 135165 1 tapT tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain Morganella morganii S5
5 group_1573 F4V73_RS00130 35582 36286 -1 tRNA-uridine aminocarboxypropyltransferase Morganella psychrotolerans
6 group_1573 PMI_RS01965 463436 464119 -1 tRNA-uridine aminocarboxypropyltransferase Proteus mirabilis HI4320