PF03880


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03880, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03880
Description DbpA RNA binding domain

Occurence in the database

PF03880 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_956 FBDBKF_05235 53190 54563 1 dbpA ATP-dependent RNA helicase DbpA Morganella morganii S1
1 group_1410 FBDBKF_08710 122544 124451 1 srmB DEAD/DEAH family ATP-dependent RNA helicase Morganella morganii S1
2 group_956 EHELCC_12355 126931 128304 -1 dbpA ATP-dependent RNA helicase DbpA Morganella morganii S2
3 group_1410 EHELCC_12815 39274 41181 -1 srmB DEAD/DEAH family ATP-dependent RNA helicase Morganella morganii S2
4 group_956 NLDBIP_12695 126886 128259 -1 dbpA ATP-dependent RNA helicase DbpA Morganella morganii S4
5 group_1410 NLDBIP_13155 39274 41181 -1 srmB DEAD/DEAH family ATP-dependent RNA helicase Morganella morganii S4
6 group_956 LHKJJB_12555 126931 128304 -1 dbpA ATP-dependent RNA helicase DbpA Morganella morganii S3
7 group_1410 LHKJJB_13400 121262 123169 1 srmB DEAD/DEAH family ATP-dependent RNA helicase Morganella morganii S3
8 group_956 HKOGLL_11170 126931 128304 -1 dbpA ATP-dependent RNA helicase DbpA Morganella morganii S5
9 group_1410 HKOGLL_11630 39274 41181 -1 srmB DEAD/DEAH family ATP-dependent RNA helicase Morganella morganii S5
10 group_956 F4V73_RS05690 1209555 1210928 1 dbpA ATP-dependent RNA helicase DbpA Morganella psychrotolerans
11 group_1410 F4V73_RS09925 89727 91724 1 DEAD/DEAH family ATP-dependent RNA helicase Morganella psychrotolerans
12 group_956 PMI_RS00530 136845 138218 1 dbpA ATP-dependent RNA helicase DbpA Proteus mirabilis HI4320
13 group_1410 PMI_RS17055 3753090 3754925 1 DEAD/DEAH family ATP-dependent RNA helicase Proteus mirabilis HI4320