PF03830


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03830, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03830
Description PTS system sorbose subfamily IIB component

Occurence in the database

PF03830 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2493 FBDBKF_01630 19046 20014 -1 manX PTS mannose transporter subunit IIAB Morganella morganii S1
1 group_901 FBDBKF_04755 153544 154017 1 agaV PTS N-acetylgalactosamine transporter subunit IIB Morganella morganii S1
2 group_2493 EHELCC_02100 406866 407834 -1 manX PTS mannose transporter subunit IIAB Morganella morganii S2
3 group_901 EHELCC_06045 213001 213474 1 agaV PTS N-acetylgalactosamine transporter subunit IIB Morganella morganii S2
4 group_2493 NLDBIP_01360 272302 273270 1 manX PTS mannose transporter subunit IIAB Morganella morganii S4
5 group_901 NLDBIP_06365 254066 254539 1 agaV PTS N-acetylgalactosamine transporter subunit IIB Morganella morganii S4
6 group_2493 LHKJJB_00675 119415 120383 -1 manX PTS mannose transporter subunit IIAB Morganella morganii S3
7 group_901 LHKJJB_03245 231590 232063 1 agaV PTS N-acetylgalactosamine transporter subunit IIB Morganella morganii S3
8 group_2493 HKOGLL_00715 124926 125894 -1 manX PTS mannose transporter subunit IIAB Morganella morganii S5
9 group_901 HKOGLL_06720 153454 153927 1 agaV PTS N-acetylgalactosamine transporter subunit IIB Morganella morganii S5
10 group_2493 F4V73_RS03970 842078 843061 -1 manX PTS mannose transporter subunit IIAB Morganella psychrotolerans
11 group_901 F4V73_RS09225 1933155 1933628 1 agaV PTS N-acetylgalactosamine transporter subunit IIB Morganella psychrotolerans
12 group_901 PMI_RS10535 2317122 2317616 -1 agaV PTS N-acetylgalactosamine transporter subunit IIB Proteus mirabilis HI4320