PF03825


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03825, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03825
Description Nucleoside H+ symporter

Occurence in the database

PF03825 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_212 FBDBKF_13730 38265 39518 -1 MFS transporter Morganella morganii S1
1 group_212 EHELCC_11400 123141 124394 -1 MFS transporter Morganella morganii S2
2 group_212 NLDBIP_11745 123141 124394 -1 MFS transporter Morganella morganii S4
3 group_212 LHKJJB_11605 123141 124394 -1 MFS transporter Morganella morganii S3
4 group_212 HKOGLL_10215 123141 124394 -1 MFS transporter Morganella morganii S5
5 group_212 F4V73_RS12600 116168 117412 -1 nucleoside permease Morganella psychrotolerans
6 group_212 PMI_RS07650 1668320 1669570 1 MFS transporter Proteus mirabilis HI4320
7 group_212 PMI_RS14680 3254604 3255851 1 MFS transporter Proteus mirabilis HI4320