PF03658


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03658, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03658
Description RnfH family Ubiquitin

Occurence in the database

PF03658 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2336 FBDBKF_18340 30725 31024 -1 pasI RnfH family protein Morganella morganii S1
1 group_2336 EHELCC_18375 30598 30897 -1 pasI RnfH family protein Morganella morganii S2
2 group_2336 NLDBIP_18300 30799 31098 -1 pasI RnfH family protein Morganella morganii S4
3 group_2336 LHKJJB_18495 30637 30936 -1 pasI RnfH family protein Morganella morganii S3
4 group_2336 HKOGLL_18230 30615 30914 -1 pasI RnfH family protein Morganella morganii S5
5 group_2336 F4V73_RS01870 409354 409653 -1 RnfH family protein Morganella psychrotolerans
6 group_2336 PMI_RS09395 2049484 2049777 -1 RnfH family protein Proteus mirabilis HI4320